Fish Communities

One of the best ways to study aquatic health is to look at the fish community, specifically which fish species exist in a particular area and the size of their populations.

Changes in the fish community can provide insight into complex ecosystem dynamics, such as prey availability for predators, the interaction between native and introduced species and changes in food webs.

Fish are a useful indicator of aquatic ecosystem health because they can reflect changes in nutrients, water quality and habitat. For this report, we look at the overall health of several major species using data from dozens of studies and long-term research conducted in Georgian Bay.

Where Are Fish Studied?

Research agencies and institutions study fish communities all over Georgian Bay, with specific survey areas often determined by the species of fish. These include lake trout rehabilitation zones, important walleye spawning populations and study sites for muskellunge, pike and smallmouth bass. The map below shows long-term research and monitoring sites from which more than 50 years of data has been collected.

Where available, Catch Per Unit Effort (CPUE) is provided on the graph below for each location and species of fish. CPUE is an indirect measure of the abundance of target species, sometimes called catch rate.

What is Measured?

Walleye at the Seguin spawning bed
Walleye in the Seguin River.

Biologists study whether different species of fish are naturally reproducing. This tells them if a population is sustainable. From years of data, they can determine population trends to see if a species is declining, improving or staying the same. However, with so many species spread over a large area, it is sometimes difficult to determine the overall health of a particular species, especially for a body of water as large as Lake Huron–Georgian Bay.

Declines in all major native species—lake trout, walleye, muskellunge, pike and others—indicate that the aquatic system has changed significantly in the past few decades. Despite restocking efforts and some habitat restoration work, the years of stress from invasive species, habitat loss and now loss of nutrients create an enormous challenge for sustaining fish populations. Added to these pressures are the effects of low water levels and climate change.

Prey Fish

Prey fish make up the majority of fish in the Great Lakes food web. Biologists study a variety of prey fish species to see how young larval fish are growing and whether there is enough food available to support them. New studies are conducted to measure the energy, or productivity, of the aquatic ecosystem, especially with the decline in nutrients, like phosphorus, that provide the foundation of the food web.

Eat or be Eaten

Prey fish populations are an excellent indicator of aquatic ecosystem health, as they can show changes in both the lower and higher levels of the food web. Prey fish rely on phytoplankton, zooplankton and benthic (bottom-dwelling) invertebrates at every depth of the lake. Prey fish, in turn, provide food for predators.

Historically, prey fish in Georgian Bay were quite diverse. In offshore waters, there was a mix of native prey fish such as the deepwater cisco (e.g., bloater), sculpin, lake herring, ninespine stickleback and trout-perch.

In nearshore waters, species like the spottail shiner, emerald shiner, young whitefish, sucker species and yellow perch were important in the diet of predators like walleye, pike and muskie. Native prey were in balance with native predators.

A non-native Alewife.
A non-native Alewife.

However, with introduced species, such as the non-native alewife and rainbow smelt, the system changed to favour an abundance of non-native prey. Even so, from the early 1970s to the early 2000s, the fish community remained stable. Stocked trout and salmon supported popular recreational fisheries and became the dominant predators in the lake, while the alewife became the most abundant prey fish.

In the late 1990s, diporeia, a benthic organism that forms the base of the food web, began to decline. Declines in zooplankton and diporeia, in part attributed to invasive zebra and quagga mussels, reduced the amount of food available for alewives. In 2003, the alewife population collapsed. Because chinook salmon fed almost exclusively on alewives, declines in the salmon population followed. By 2005, the chinook salmon population had also collapsed.

While no single species has filled the role of the alewife as the dominant prey fish, several native species, including the yellow perch, cisco and emerald shiner, have experienced population increases. The only substantial native prey species remaining in offshore waters is the deepwater cisco species known as the bloater. Overall, prey fish diversity and abundance have declined, creating a food web imbalance where there is less food energy in the system for predators.

Chinook salmon pre-2003.
Chinook salmon post-2003.

It is likely that changes in the prey fish community are a result of top-down and bottom-up pressures in the food web. At the top, introduced and abundant salmon species consumed an excess of alewives and other prey. At the bottom, a major decrease in phosphorus offshore caused declines in the production of phytoplankton, zooplankton and benthic species. In turn, less food is now available for young fish, which threatens their growth and survival. Given this combination of pressures, prey fish are “squeezed” in the middle.

Prey fish populations have declined over 90% in Lake Huron.

 

With the recent introduction of a predatory zooplankton called the spiny water flea, the food web is further changing, with unknown outcomes.

Changes to the composition and abundance of prey fish in Lake Huron present new challenges for fisheries managers. Ecological changes that used to occur over decades are now happening in just a few years. More research by agencies and institutions will be needed to investigate complex changes in Georgian Bay’s fish community, food web and water quality to help communities make good decisions about the Bay and area lakes.

 

Smallmouth Bass

A Smallmouth Bass
Smallmouth Bass

Smallmouth bass are an important native predator of the nearshore warm-water fish community. The diet of young smallmouth bass begins at the bottom of the food web and expands to include almost all aquatic organisms as the fish mature. As a result, thriving smallmouth bass populations suggest productivity and good health in the lower food web.

In eastern Georgian Bay, smallmouth bass are one of the more abundant species, yet they too are affected by human activities, including harvesting, habitat disturbances and shoreline development. They are also sensitive to warming temperatures and changing water levels. Although some smallmouth bass populations appear to be healthy, others are less abundant, and some are actually declining, so biologists cannot confirm a definitive trend for Georgian Bay.

Know Your Gobies!

The round goby is an invasive fish that was introduced to the Great Lakes in the 1990s. Some have been found to eat eggs of native fish, such as those of walleye. Some studies show that smallmouth bass are actually feeding on the invasive round goby—another change in the food web.

Round Goby Tubenose GobySculpins Goby

Top: Round gobies (invasive) have a prominent black spot on the first dorsal fin and a fused (single) pelvic fin. Middle: Tubenose gobies (invasive) lack a black spot on the dorsal fin and have small nostril tubes that extends over the upper lip. Bottom: Sculpins (native) lack a black spot on the first dorsal fin and have two separate pelvic fins.

Northern Pike

Northern Pike
Northern Pike

The northern pike is a top predator that lives in nearshore waters and secluded bays. Like muskellunge, northern pike are reliant on coastal wetlands for successful spawning and nursery habitat.

Although northern pike are not considered threatened anywhere in Canada, they are as vulnerable to habitat loss as any other freshwater species. From a high of 1.6 million kilograms per year in 1900, the northern pike fishery declined to less than 0.05 million kilograms per year by the late 1960s, with the loss of nearshore spawning and nursery habitat resulting from shoreline development throughout the Great Lakes.

More recently, sustained low water levels, along with continued shoreline development, have reduced the important coastal wetlands upon which northern pike rely. Among the 10 populations of northern pike studied in Georgian Bay, some are declining, some are improving and some are unchanged.

This chart illustrates the decrease in northern pike abundance in the Severn Sound area, as compared to Georgian Bay water levels. As water levels decline, so do pike populations.

 

Muskellunge

Muskellunge
Muskellunge

Known to many as “muskie,” these impressive fish are a native predator of nearshore environments and a highly sought after trophy fish. The nearshore waters of eastern Georgian Bay and the North Channel are thought to support the largest contiguous distribution of muskellunge populations in the Great Lakes.

Research about muskellunge can help us understand the productivity of nearshore fish communities. Because muskie require coastal wetlands to spawn, changes to these habitats can affect reproductive success and populations over time.

Did you know?

The Ontario record muskellunge was caught in the Moon River Basin’s Blackstone Harbour in 1988. The fish measured 147.3 centimetres (58 inches) and weighed 29.5 kilograms (65 pounds).

In Ontario, the fisheries goal for muskellunge populations is for them to be self-sustaining, and to maintain the world-class fishery present in Georgian Bay. Unfortunately, muskellunge have a low reproductive rate, grow rather slowly and have had their spawning and nursery habitat affected by shoreline development and some years of sustained low water levels.

Did you know?

Muskellunge return to the same spawning location each year and may be unable to adapt to changing habitat conditions.

Provincial biologists have been surveying muskellunge populations in eastern Georgian Bay and the North Channel since 1996. Their surveys confirm the widespread distribution and presence of mature muskellunge throughout eastern Georgian Bay. Nevertheless, there is continued concern over the potential for high-quality spawning and nursery habitat to become degraded and subsequently impact natural reproduction of the species.

Research shows that muskie populations in eastern Georgian Bay and the North Channel appear to be unchanging, indicating a naturally reproducing, sustainable population. But populations in southern Georgian Bay may be deteriorating. Further studies will be needed to determine each of these trends.

Did you know?

If the muskellunge population is to remain self-sustaining, then preserving coastal wetlands is a priority.

Researchers are calling for a strategy to identify and ultimately protect suitable muskellunge breeding habitat.

Arunas Liskauskas – Upper Great Lakes Management Unit (MNRF)

 

Walleye

Walleye
Walleye

Populations of spawning walleye are located throughout Lake Huron and usually live near a particular river. Of the 37 important walleye populations that are studied, 16 of them are found in the Georgian Bay Biosphere region. Researchers are most interested in the size of the population, spawning success and natural reproduction, as well as the age of individual fish. The age of fish helps determine if they have matured enough to reproduce.

Native to Lake Huron, and sometimes called pickerel, walleye are a valuable indicator of fish health, as they are a top predator of the cool-water nearshore community. Stable walleye populations suggest that their habitat is healthy and nearshore food webs are productive.

Walleye use different habitats throughout their life cycle. Most mature walleye in Georgian Bay move into rivers to spawn in the spring (although some spawn on shoals). They move back out to the Bay as water temperatures increase in the summer. Good-quality habitat will provide the food and shelter walleye require.

Because walleye tend to be directly and indirectly exposed to human activities, their populations can offer insights into the extent of those impacts. Given that walleye spawn in rivers, they are also good indicators of the health of rivers.

At one time, walleye were plentiful, and Georgian Bay became known for the size of its fish. However, since the early 1900s, most Georgian Bay walleye stocks have declined due to a combination of overexploitation, human alteration of rivers and waterways and the introduction of invasive species. Dams in rivers change the flow of water, and high water can threaten eggs by washing them away, while low water can cause them to dry them out. In the Moon River, for example, where walleye spawning runs used to number over 30,000 fish, these numbers have dropped more recently to only several hundred.

Since the early 1980s, efforts to rehabilitate walleye populations have included habitat restoration, stocking young fish and imposing regulations that restrict harvesting. These efforts have had mixed success, and very few walleye populations are currently sustainable.

Lake Trout

Lake Trout
Lake Trout

Lake trout are a top cold-water predator in Lake Huron and Georgian Bay. They are considered a useful indicator of the health of our offshore waters. Assessing their populations can provide insights into food web productivity, the presence and effects of invasive species and the availability and quality of fish habitat. They spawn in shallower waters in the fall and feed in them in the spring. In addition to their important ecological role, lake trout in Georgian Bay are caught commercially and recreationally.

Prior to 1940, numerous populations lived in the deep offshore waters. An invasion of sea lamprey (an eel-like parasitic fish), overharvesting and the decline of their major food source (the deepwater cisco) caused lake trout to collapse in all but two isolated locations: Iroquois Bay and Parry Sound.

In 1969, efforts began to rehabilitate lake trout. Sea lamprey controls were implemented across the Great Lakes. Lake trout were stocked using the same genetic strain as those found in Parry Sound, and a fish sanctuary was established. The Parry Sound population of lake trout is the only one to be considered fully rehabilitated outside of Lake Superior.

Unfortunately, lake trout populations have not re-established in most locations where they were found historically. The management goal for lake trout is to restore populations to the point where they are naturally reproducing. With reduced productivity in the offshore waters and other ecosystem changes, the prospects for lake trout rehabilitation in Georgian Bay are uncertain.

Partner Profile: Shawanaga First Nation

Shawanaga First Nation is taking care of the land with traditional harvests, particularly in our careful monitoring of the walleye population on the Shawanaga River. Since the 1970s, monitoring of the fish harvest, as well as guidelines agreed to by community members, have ensured that only enough fish are taken to sustain each family and for cultural ceremonies.

We have continued with this practice for the last 40 years. Our First Nation has employed 8 to 10 community members each year to assist with the monitoring, which takes place 24 hours a day during peak harvest season. This includes: data collection, species protection, and traditional harvesting for the Elders, community members in need and our various ceremonies held throughout the year.

In 2002, Shawanaga First Nation decided to start a walleye fish hatchery to help offset the tremendous pressure on the walleye population from all resource users, including the traditional harvest, commercial fishing, and sport fishing.

The goal of the Shawanaga First Nation Fish Hatchery is to ensure the sustainability of the walleye species – not only for our community, but also for all people of generations to come. This is done by collecting and fertilizing 85-90% of all eggs from the fish harvested, mixing the genetic stock, and by teaching the younger people traditional practices, which includes conservation teachings, such as releasing mature females to let them reproduce.

The community abides by strict limits (three fish per day, per household). Some years, the First Nation decides to put a moratorium on fishing among its members to protect the walleye population. Staff on the river can help us to ensure that Shawanaga First Nation continues to practice conservation for future generations, in accordance with both our Inherent and our Treaty Rights.

Annually, we have successfully raised and released an average 1.5 million fry back into the Shawanaga River system, with a high of 5 million in 2012. In addition, there are high numbers of eggs fertilized and returned directly to the spawning bed.

Reports from both the Ontario Ministry of Natural Resources and Forestry (MNRF) and the Eastern Georgian Bay Stewardship Council have shown that the conservation practices of the First Nation are having a measurable and positive effect on the walleye population.

We believe that walleye in Georgian Bay need this level of care and that populations will continue to grow with our increased efforts. This is a direct reflection of the stance of the First Nation, that reciprocity is the foundation of our leadership in land and resource management because we are the keepers of the land.

With our good conservation techniques and traditional harvesting practices, while still allowing the river to be a thriving fishery for people from all walks of life, we will need the help of all people to ensure that this population continues to stand out in Lake Huron as one of the most healthy and sustainable stocks.

Partner Profile: Eastern Georgian Bay Stewardship Council

Assessing walleye egg deposition on the Key River.
Assessing walleye egg deposition on the Key River.

From egg to adult, fish require different habitats throughout their lives. What is considered good habitat for a larval fish may not be ideal for a spawning adult of the same species. The Eastern Georgian Bay Stewardship Council undertook a project in 2015 with the goal of assessing whether there is sufficient accessible fish habitat to support walleye, lake sturgeon and sucker species in eight rivers of eastern Georgian Bay. They included the Seguin, Shebeshekong, Shawanaga, Naiscoot, Magnetawan, Key and Pickerel Rivers, as well as Sucker Creek in Pointe au Baril.

In order to assess the habitat required by these species during different stages of their lives (such as spawning, nursery, rearing and foraging), the staff conducted fieldwork at spawning beds in the spring and downstream habitat in the summer and fall. Fieldwork involved a number of techniques: aerial photographs of the river using a drone; counting eggs deposited on egg mats; measuring flow, depth and basic water chemistry at spawning beds; conducting night-spawning surveys; taking underwater video; using sonar and side-scan technologies; and snorkelling.

Based on the assessment, done in 2016, restoration was recommended on the Shebeshekong River to improve fish passage to good walleye and sucker spawning habitat. With help from Biotactic Inc., Wasauksing First Nation, local landowners, Carling Township and community volunteers, the restoration work was completed in fall 2017. The Eastern Georgian Bay Stewardship Council, with its partners, will continue to monitor the Shebeshekong River in future years to determine whether the restoration has been successful or if further enhancement is needed.

Visit georgianbaystewardship.ca to learn more.

Partner Profile: Upper Great Lakes Management Unit

Upper Great Lakes Management UnitBased in Owen Sound, this unit of the Ministry of Natural Resources and Forestry oversees fishery management and assessment programs on Lake Huron and Georgian Bay. The biologists and managers seek to involve the broader community in achieving the goals of conserving Ontario’s biodiversity and ecosystem health. They work closely with U.S. State and Federal agencies, stakeholders, and other partners. The Upper Great Lakes Management Unit has been a critical partner on the State of the Bay project, providing data from fish index netting and recommendations from management plans. Resources are needed for research agencies like this one to provide effective ecosystem monitoring on a long-term basis.

Picture

Rainbow Smelt

Introduced

Rainbow smelt invaded the Great Lakes watershed through an intentional introduction to Crystal Lake, Michigan in 1912. They were first reported in Lake Huron in 1925.

1925
Picture

Sea Lamprey

Introduced

Sea lampreys are parasitic fish native to the Atlantic Ocean that parasitize other fish by sucking their blood and other body fluids. Host fish in the Great Lakes are often unable to survive sea lamprey parasitism, either dying directly from an attack or from infections in the wound after an attack.

1932
Picture

Alewife

Introduced

The alewife, native to the Atlantic Ocean, entered the Great Lakes through canals. For some predators like lake trout, consuming alewife can lead to the development of a thiamine deficiency which affects fish reproduction and survival.

1933
Picture

Lake Trout

Population Collapsed

Lake trout were historically the top cold water predator in Lake Huron. The combination of the invasion of sea lamprey, over-exploitation, and the decline of major food sources caused what were once abundant populations to collapse.

1950
Picture

Sea Lamprey

Control Program Started

Chemical control programs for sea lamprey began in Lake Huron in the 1960s. The primary method to control sea lamprey is the application of lampricide to target sea lamprey larvae in their nursery tributaries.

1960
Picture

Chinook Salmon

Stocking Program Started

Chinook and coho salmon were introduced to Lake Huron by the State of Michigan to control overly abundant rainbow smelt and alewife populations and to create a recreational fishery.

1968
Picture

Spiny Water Flea

Introduced

First discovered in Lake Huron in 1984, the spiny water flea was likely introduced through ballast water of ocean going ships. Since then, populations have exploded and the carnivorous zooplankters are finding their way into inland lakes, competing with larval fish for food.

1984
Picture

Zebra Mussels

Introduced

Zebra mussels are very efficient filter feeders. They affect nutrient availability by removing detritus, algae, and small zooplankton from the water column, resulting in less available food for young fish, zooplankton, and other native species.

1988
Picture

Quagga Mussles

Introduced

Quagga mussels became established in Lake Huron in the 1990s (except in the North Channel) and over the period from 2000-2007, underwent major expansion ultimately replacing zebra mussels at shallow depths (<50 m).

1991
Picture

Chinook Salmon

Population rise due to reproduction in the wild.

Reproduction of Chinook Salmon in Lake Huron, which mainly takes place in tributaries to Georgian Bay and the North Channel, rose sharply after 1992. This caused an increase in population and consequently, high predation rates on Alewives.

1992
Picture

Round Goby

Introduced

Round Gobies are small, non-native, bottom-dwelling fish with a large appetite. They eat invasive mussels, several small native fish species, as well as the fry and eggs of walleye and lake trout. Round Gobies are prolific spawners, females can spawn multiple times during the summer and can lay up to 5,000 eggs each time.

1996
Picture

Diporeia

Population starts to decline.

Diporeia was once the most abundant benthic organisms in the cold, offshore regions of Lake Huron and a key component of the food web. Populations began declining in 1998 and by 2007, a survey of Lake Huron’s main basin showed overall abundance of Diporeia had decreased by more than 90% compared to 2000.

1998
Picture

Alewife

Population Collapse

In 2003, the Alewife population collapsed. Declines in zooplankton and Diporeia reduced the amount of food available for alewives which led to a decline in their abundance.

2003
Picture

Chinook Salmon

Population Collapse

Because Alewives were a major part of the Chinook Salmon diet, the alewife population collapse in 2003 influenced the Chinook Salmon greatly. The salmon preyed heavily on the remaining alewives until their eventual population collapse in 2005.

2005

Next Chapter: Coastal Wetlands